Reference papers:

• Lemson G. and the Virgo Consortium (2006), arXiv:astro-ph/0608019 (public release of the Millennium Simulation database)
• Springel V., et al. (2005), Nature, 435, 629 (main paper for the Millennium Simulation)
• Springel V., et al. (2008), MNRAS, 391, 1685 (introductory paper for the Aquarius Project)
• Springel V., White S. D. M., Tormen G., Kauffmann G. (2001), MNRAS, 328, 726 (introduction of the SUBFIND algorithm)

Papers using data from the Millennium-II Simulation:

1. arXiv:0903.3041 [pdf, other]
   Title: Resolving Cosmic Structure Formation with the Millennium-II Simulation

   Authors: Michael Boylan-Kolchin (1), Volker Springel (1), Simon D. M. White (1), Adrian Jenkins (2), Gerard Lemson (3, 4)
   (1) MPA, (2) Durham, (3) ARI-ZAH, (4) MPE

   Comments: 16 pages, 13 figures; matches version published in MNRAS. Halo catalogs and merger trees, along with movies, images, and additional information, are available at this http URL

   Journal-ref: Mon.Not.Roy.Astron.Soc. 398, 1150 (2009)
2. arXiv:0908.2428 [ps, pdf, other]
   Title: Extragalactic gamma-ray background radiation from dark matter annihilation

   Authors: Jesus Zavala, Volker Springel, Michael Boylan-Kolchin

   Comments: 21 pages, 16 figures, submitted to MNRAS
3. arXiv:0909.4305 [ps, pdf, other]
   Title: How do galaxies populate Dark Matter halos?

   Authors: Qi Guo, Simon White, Cheng Li, Michael Boylan-Kolchin

   Comments: 10 pages, 6 figures, submitted to MNRAS
4. arXiv:0911.4484 [pdf, other]
   Title: There's no place like home? Statistics of Milky Way-mass dark matter halos

   Authors: Michael Boylan-Kolchin, Volker Springel, Simon D. M. White, Adrian Jenkins

   Comments: 18 pages, 15 figures; submitted to MNRAS
5. arXiv:0912.0013 [ps, pdf, other]
   Title: The impact of environment on the dynamical structure of satellite systems

   Authors: Andreas Faltenbacher (UWC)

   Comments: 7 pages, 4 figures, submitted to MNRAS
6. arXiv:1001.2304 [pdf, other]
   Title: The Merger Rates and Mass Assembly Histories of Dark Matter Haloes in the Two Millennium Simulations

   Authors: Onsi Fakhouri (Berkeley), Chung-Pei Ma (Berkeley), Michael Boylan-Kolchin (MPA)

   Comments: 12 pages, 9 figures, submitted to MNRAS
7. arXiv:1001.3307 [ps, pdf, other]
   Title: Mapping extragalactic dark matter structures through gamma-rays

   Authors: Jesus Zavala, Volker Springel, Michael Boylan-Kolchin

   Comments: 7 pages, 5 figures, 2009 Fermi Symposium, eConf Proceedings C091122
8. arXiv:1003.0671 [pdf, ps, other]
   Title: What is the Matter with Dwarf Galaxies?

   Authors: Till Sawala, Qi Guo, Cecilia Scannapieco, Adrian Jenkins, Simon D.M. White

   Comments: 10 pages, 5 figures, submitted to MNRAS
9. arXiv:1003.3021 [ps, pdf, other]
   Title: A semi-analytic model comparison - gas cooling and galaxy mergers

   Authors: Gabriella De Lucia, Michael Boylan-Kolchin, Andrew J. Benson, Fabio Fontanot, Pierluigi Monaco

   Comments: 21 pages, 14 figures, submitted to MNRAS
10. arXiv:1004.1302 [pdf, other]
    Title: High-performance astrophysical visualization using Splotch

    Authors: Zhefan Jin, Mel Krokos, Marzia Rivi, Claudio Gheller, Klaus Dolag, Martin Reinecke

    Comments: 10 pages, accepted for publication at ICCS 2010 conference
11. arXiv:1005.4058 [pdf, ps, other]
    Title: The growth of dark matter halos: evidence for significant smooth accretion

    Authors: Shy Genel, Nicolas Bouché, Thorsten Naab, Amiel Sternberg, Reinhard Genzel

    Comments: 11 pages, 9 figures. Submitted to the Astrophysical Journal, revised version after referee's comments
12. arXiv:1006.0106 [pdf, ps, other]
    Title: From dwarf spheroidals to cDs: Simulating the galaxy population in a LCDM cosmology

    Authors: Qi Guo, Simon White, Michael Boylan-Kolchin, Gabriella De Lucia, Guinevere Kauffmann, Gerard Lemson, Cheng Li, Volker Springel, Simone Weinmann

    Comments: 33 pages, 24 figures. Submitted to MNRAS. The full galaxy catalogues for these models at all redshifts and for the Millennium and Millennium-II simulations will be made available at this http URL as soon as this paper is accepted for publication
13. arXiv:1006.2882 [pdf, ps, other]
    Title: The statistics of the subhalo abundance of dark matter haloes

    Authors: L. Gao, C. S. Frenk, M. Boylan-Kolchin, A. Jenkins, V. Springel, S. D. M. White

    Comments: 7 pages. Submitted to MNRAS
14. arXiv:1008.0857 [pdf, ps, other]
    Title: A Large Number of z > 6 Galaxies around a QSO at z = 6.43: Evidence for a Protocluster?

    Authors: Yousuke Utsumi (1, 2), Tomotsugu Goto (3, 4), Nobunari Kashikawa, Satoshi Miyazaki, Yutaka Komiyama (1, 2), Hisanori Furusawa (2), Roderik Overzier (5) ((1) The Graduate University for Advanced Studies (2) National Astronomical Observatory of Japan (3) Institute for Astronomy, University of Hawaii (4) Subaru Telescope (5) Max-Planck Institute für Astrophysik )

    Comments: Accepted for publication in ApJ. 11 pages, 8 figures
15. arXiv:1010.4797 [pdf, other]
    Title: Dynamics of the Magellanic Clouds in a LCDM Universe

    Authors: Michael Boylan-Kolchin, Gurtina Besla, Lars Hernquist

    Comments: submitted to MNRAS; 14 pages, 13 figures
16. arXiv:1102.0002 [pdf, ps, other]
    Title: The Density and Pseudo-Phase-Space Density Profiles of CDM halos

    Authors: Aaron D. Ludlow, Julio F. Navarro, Michael Boylan-Kolchin, Volker Springel, Adrian Jenkins, Carlos S. Frenk, Simon D. M. White

    Comments: 9 pages, 7 figures, submitted to MNRAS
17. arXiv:1103.0007 [pdf, other]
    Title: Too big to fail? The puzzling darkness of massive Milky Way subhalos

    Authors: Michael Boylan-Kolchin, James S. Bullock, Manoj Kaplinghat

    Comments: 6 pages, 5 figures; submitted to MNRAS Letters
18. arXiv:1103.0776 [pdf, ps, other]
    Title: The cosmic X-ray and gamma-ray background from dark matter annihilation

    Authors: Jesus Zavala (1), Mark Vogelsberger (2), Tracy R. Slatyer (3), Abraham Loeb (2), Volker Springel (4) ((1) MPA, (2) Harvard/CfA, (3) IAS, (4) HITS)

    Comments: 16 pages, 6 figures, submitted to Physical Review D
19. arXiv:1103.1875 [pdf, other]
    Title: Small-Scale Structure in the SDSS and LCDM: Isolated L* Galaxies with Bright Satellites

    Authors: Erik J. Tollerud, Michael Boylan-Kolchin, Elizabeth J. Barton, James S. Bullock, Christopher Q. Trinh

    Comments: 14 pages, 11 figures; submitted to ApJ
20. arXiv:1104.5130 [pdf, ps, other]
    Title: Halo concentrations in the standard LCDM cosmology

    Authors: Francisco Prada, Anatoly A. Klypin, Antonio J. Cuesta, Juan E. Betancort-Rijo, Joel Primack

    Comments: Submitted to MNRAS
21. arXiv:1105.0674 [pdf, ps, other]
    Title: Dwarf galaxy populations in present-day galaxy clusters: I. Abundances and red fractions

    Authors: Simone M. Weinmann, Thorsten Lisker, Qi Guo, Hagen T. Meyer, Joachim Janz

    Comments: 20 pages, 10 figures. Submitted to MNRAS. Comments welcome
22. arXiv:1105.2293 [pdf, ps, other]
    Title: The Effects of Patchy Reionization on Satellite Galaxies of the Milky Way

    Authors: Ragnhild Lunnan (1), Mark Vogelsberger (1), Anna Frebel (1), Lars Hernquist (1), Adam Lidz (2), Michael Boylan-Kolchin (3) ((1) Harvard/CfA, (2) UPenn, (3) UC Irvine)

    Comments: 11 pages, 9 figures, submitted to ApJ
23. arXiv:1105.3880 [pdf, ps, other]
    Title: Autocorrelations of stellar light and mass at z~0 and ~1: From SDSS to DEEP2

    Authors: Cheng Li, Simon D. M. White, Yanmei Chen, Alison L. Coil, Marc Davis, Gabriella De Lucia, Qi Guo, Y. P. Jing, Guinevere Kauffmann, Christopher N. A. Willmer, Wei Zhang

    Comments: 10 pages, 4 figures, submitted for publication in Monthly Notices
24. arXiv:1107.2648 [pdf, ps, other]
    Title: Predicting the Merger Fraction of Lyman alpha Emitters from Redshift z~3 to z~7

    Authors: Vithal Tilvi, Evan Scannapieco, Sangeeta Malhotra, James E. Rhoads (School of Earth & Space Exploration, Arizona State University)

    Comments: Accepted in MNRAS
25. arXiv:1107.2942 [pdf, ps, other]
    Title: Adaptive gravitational softening in GADGET

    Authors: Francesca Iannuzzi, Klaus Dolag

    Comments: 15 pages, 21 figures, 1 table. Accepted for publication in MNRAS
26. arXiv:1107.3145 [pdf, ps, other]
    Title: The relation between metallicity, stellar mass and star formation in galaxies: an analysis of observational and model data

    Authors: Robert M. Yates, Guinevere Kauffmann, Qi Guo

    Comments: 18 pages, 18 figures, 2 tables. Submitted to MNRAS
27. arXiv:1107.4419 [pdf, ps, other]
    Title: A modified star formation law as a solution to open problems in galaxy evolution

    Authors: Lan Wang, Simone M. Weinmann, Eyal Neistein

    Comments: 14 pages, 12 figures, submitted to MNRAS
28. arXiv:1109.2484 [pdf, other]
    Title: Interpreting supernovae observations in a lumpy universe

    Authors: Chris Clarkson, George Ellis, Andreas Faltenbacher, Roy Maartens, Obinna Umeh, Jean-Philippe Uzan

    Comments: 17 pages and 3 figures
29. arXiv:1110.0324 [pdf, ps, other]
    Title: Dark Matter implications of the Fermi-LAT measurement of anisotropies in the diffuse gamma-ray background: status report

    Authors: Mattia Fornasa (1,2), Jesus Zavala (3), Miguel A. Sanchez-Conde (4), Francisco Prada (1), Mark Vogelsberger (5) ((1) Instituto de Astrofisica de Andalucia IAA-CSIC, (2) MultiDark fellow, (3) Department of Physics and Astrophysics, University of Waterloo, (4) KIPAC - SLAC National Accelerator Laboratory, (5) Harvard-Smithsonian Center for Astrophysics)

    Comments: Proceeding for the RICAP2011 conference
30. arXiv:1110.1185 [pdf, ps, other]
    Title: On the Effects of Line-of-Sight Structures on Lensing Flux-ratio Anomalies in a LCDM Universe

    Authors: D. D. Xu, Shude Mao, Andrew Cooper, Liang Gao, Carlos Frenk, Raul Angulo, John Helly

    Comments: 16 pages, 11 figures, submitted to MNRAS, comments are welcome
31. arXiv:1110.4106 [pdf, ps, other]
    Title: The initial mass spectrum of old globular clusters in dwarf galaxies

    Authors: J. M. Diederik Kruijssen (MPA Garching), Andrew P. Cooper (MPA Garching)

    Comments: 7 pages, 2 figures, 1 table, accepted for publication by MNRAS
32. arXiv:1110.4888 [pdf, ps, other]
    Title: The effects of alignment and ellipticity on the clustering of galaxies

    Authors: Marcel P. van Daalen (1 and 2), Raul E. Angulo (1), Simon D. M. White (1) ((1) Max Planck Institute for Astrophysics (2) Leiden Observatory, Leiden University)

    Comments: 5 pages, 3 figures. Submitted to MNRAS Letters
33. arXiv:1111.2048 [pdf, other]
    Title: The Milky Way's bright satellites as an apparent failure of LCDM

    Authors: Michael Boylan-Kolchin, James S. Bullock, Manoj Kaplinghat

    Comments: 17 pages, 10 figures; submitted to MNRAS
34. arXiv:1111.5616 [pdf, other]
    Title: The Shapes and Alignments of Dark Matter Halos

    Authors: Michael D. Schneider, Carlos S. Frenk, Shaun Cole

    Comments: 44 pages, 21 figures, submitted to JCAP